This entry was last updated at: June 13, 2016, 11:11 a.m.
Group | [NiFe] Group 2: Alternative and sensory H2-uptake [NiFe] hydrogenases |
Subgroup | [NiFe] Group 2b: Histidine kinase-linked |
Function | H2-sensing in regulatory cascades. Enzyme transfers H2-liberated electrons to PAS domain. Associated redox change modulates histidine kinase activity and in turn the two-component system controlling expression of primary H2-uptake hydrogenases. |
Activity | H2-sensing |
Oxygen tolerance | O2-tolerant |
Localisation | Cytosolic |
Ecosystem distribution | Various soil and aquatic samples |
Taxonomic distribution | Exclusive to aerobic Proteobacteria |
e.g. Ralstonia eutropha (WP_011153946.1):
Structures |
|
Subunits | 3 |
Subunit description | HupV (hydrogenase large subunit) HupU (hydrogenase small subunit) HupK (histidine kinase) Interacts with response regulator (HupR) |
Catalytic site | [NiFe]-centre |
FeS clusters | Proximal: 4Cys[4Fe4S] Medial: 4Cys[4Fe4S] Distal: 3Cys1His[4Fe4S] |
NCBI Accession | Organism | Hydrogenase Class | Phylum | Order | Activity (Predicted) | Oxygen Tolerance (Predicted) | Subunits (Predicted) | Metal Centres (Predicted) | Accessory Subunits (Predicted) |
---|---|---|---|---|---|---|---|---|---|
WP_029556474.1 | Xanthobacter sp. 91 | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_024281261.1 | Xanthobacter sp. 126 | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_011996000.1 | Xanthobacter autotrophicus | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_018904285.1 | Variovorax paradoxus | [NiFe] Group 2b | Betaproteobacteria | Burkholderiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_002706876.1 | Thiothrix nivea | [NiFe] Group 2b | Gammaproteobacteria | Thiotrichales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_020394871.1 | Thiothrix disciformis | [NiFe] Group 2b | Gammaproteobacteria | Thiotrichales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_007041639.1 | Thiorhodococcus drewsii | [NiFe] Group 2b | Gammaproteobacteria | Chromatiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_013124503.1 | Thiomonas intermedia | [NiFe] Group 2b | Betaproteobacteria | Burkholderiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
AAX40740.1 | Thiocapsa roseopersicina | [NiFe] Group 2b | Gammaproteobacteria | Chromatiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_007194465.1 | Thiocapsa marina | [NiFe] Group 2b | Gammaproteobacteria | Chromatiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_019642787.1 | Thioalkalivibrio sp. ALSr1 | [NiFe] Group 2b | Gammaproteobacteria | Chromatiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_028877931.1 | Terasakiella pusilla | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_020043467.1 | Salipiger mucosus | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_005863651.1 | Sagittula stellata | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_014429792.1 | Rubrivivax gelatinosus | [NiFe] Group 2b | Betaproteobacteria | Burkholderiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_008282513.1 | Roseovarius sp. TM1035 | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_008386856.1 | Rhodovulum sp. PH10 | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_022723662.1 | Rhodopseudomonas sp. B29 | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_011662668.1 | Rhodopseudomonas palustris | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_013418661.1 | Rhodomicrobium vannielii | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_011466381.1 | Rhodoferax ferrireducens | [NiFe] Group 2b | Betaproteobacteria | Burkholderiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_002720656.1 | Rhodobacter sphaeroides | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_008030826.1 | Rhodobacter sp. SW2 | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_023664198.1 | Rhodobacter sp. CACIA14H1 | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_009566015.1 | Rhodobacter sp. AKP1 | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_023918084.1 | Rhodobacter capsulatus | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_028738631.1 | Rhizobium selenitireducens | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_011153946.1 | Ralstonia eutropha | [NiFe] Group 2b | Betaproteobacteria | Burkholderiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_017845586.1 | Pseudomonas veronii | [NiFe] Group 2b | Gammaproteobacteria | Pseudomonadales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_024762399.1 | Pseudomonas nitroreducens | [NiFe] Group 2b | Gammaproteobacteria | Pseudomonadales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_010563032.1 | Pseudomonas extremaustralis | [NiFe] Group 2b | Gammaproteobacteria | Pseudomonadales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_023105857.1 | Pseudomonas aeruginosa | [NiFe] Group 2b | Gammaproteobacteria | Pseudomonadales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_011801344.1 | Polaromonas naphthalenivorans | [NiFe] Group 2b | Betaproteobacteria | Burkholderiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_007796497.1 | Pelagibaca bermudensis | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_028717756.1 | Paracoccus yeei | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_028714014.1 | Paracoccus sp. J55 | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_024844879.1 | Paracoccus pantotrophus | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_011749363.1 | Paracoccus denitrificans | [NiFe] Group 2b | Alphaproteobacteria | Rhodobacterales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_013913763.1 | Oligotropha carboxidovorans | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_028302096.1 | Oceanospirillum beijerinckii | [NiFe] Group 2b | Gammaproteobacteria | Oceanospirillales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_028293252.1 | Oceanobacter kriegii | [NiFe] Group 2b | Gammaproteobacteria | Oceanospirillales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_008068222.1 | Novosphingobium nitrogenifigens | [NiFe] Group 2b | Alphaproteobacteria | Sphingomonadales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_020162849.1 | Methyloversatilis universalis | [NiFe] Group 2b | Betaproteobacteria | Rhodocyclales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_018412518.1 | Methyloversatilis sp. NVD | [NiFe] Group 2b | Betaproteobacteria | Rhodocyclales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_003612204.1 | Methylosinus trichosporium | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_018266917.1 | Methylosinus sp. LW4 | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_024878510.1 | Methylosinus sp. LW3 | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_014891818.1 | Methylocystis sp. SC2 | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_026600034.1 | Methylocystis sp. LW5 | [NiFe] Group 2b | Alphaproteobacteria | Rhizobiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
WP_011830389.1 | Methylibium petroleiphilum | [NiFe] Group 2b | Betaproteobacteria | Burkholderiales | Sensory | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Histidine kinase, response regulator |
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