This entry was last updated at: Feb. 9, 2018, 7:09 a.m.
Group | [NiFe] Group 4: Respiratory H2-evolving [NiFe] hydrogenases |
Subgroup | [NiFe] Group 4a: Formate hydrogenlyases |
Function | Directly couples formate oxidation to H2 evolution. It remains unclear whether this process can be coupled to proton-translocation through the transmembrane modules. Reverse reaction occurs in vitro but unresolved whether it occurs in vivo. |
Activity | H2-evolution |
Oxygen tolerance | O2-sensitive |
Localisation | Membrane-bound |
Ecosystem distribution | Animal gastrointestinal tracts |
Taxonomic distribution | Encoded in Enterobacteria and several other Proteobacteria |
Organisation 1: Escherichia coli hyc operon (WP_014639275.1):
Organisation 2: Escherichia coli hyf operon (WP_014641051.1):
Structures |
|
Subunits | 6 or 9 |
Subunit description | HycE / HyfG (hydrogenase large subunit) HycG / HyfI (hydrogenase small subunit) HycF / HyfH (iron-sulfur protein) HycB / HyfA (iron-sulfur protein) HycC / HyfB (NuoL-like transmembrane adaptors) HycD / HyfC (NuoH-like transmembrane adaptors) Hyf-type enzymes additionally associated with three antiporter-like subunits (HyfD, HyfE, HyfF) Loosely associated with formate dehydrogenase module (FdhF) |
Catalytic site | [NiFe]-centre |
FeS clusters | Proximal: 4Cys[4Fe4S] Medial: Absent Distal: Absent |
NCBI Accession | Organism | Hydrogenase Class | Phylum | Order | Activity (Predicted) | Oxygen Tolerance (Predicted) | Subunits (Predicted) | Metal Centres (Predicted) | Accessory Subunits (Predicted) |
---|---|---|---|---|---|---|---|---|---|
WP_022739022.1 | Adlercreutzia equolifaciens | [NiFe] Group 4a | Actinobacteria | Coriobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_006234109.1 | Collinsella aerofaciens | [NiFe] Group 4a | Actinobacteria | Coriobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_022095197.1 | Collinsella sp. CAG:166 | [NiFe] Group 4a | Actinobacteria | Coriobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_012802521.1 | Cryptobacterium curtum | [NiFe] Group 4a | Actinobacteria | Coriobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_016310471.1 | Enterorhabdus caecimuris | [NiFe] Group 4a | Actinobacteria | Coriobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_028027490.1 | Enterorhabdus mucosicola | [NiFe] Group 4a | Actinobacteria | Coriobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_006362270.1 | Slackia exigua | [NiFe] Group 4a | Actinobacteria | Coriobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_009077323.1 | Slackia sp. CM382 | [NiFe] Group 4a | Actinobacteria | Coriobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_011474970.1 | Rhodopseudomonas palustris | [NiFe] Group 4a | Alphaproteobacteria | Rhizobiales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_008384313.1 | Rhodovulum sp. PH10 | [NiFe] Group 4a | Alphaproteobacteria | Rhodobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_029010114.1 | Azospirillum halopraeferens | [NiFe] Group 4a | Alphaproteobacteria | Rhodospirillales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_014249328.1 | Azospirillum lipoferum | [NiFe] Group 4a | Alphaproteobacteria | Rhodospirillales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_028536385.1 | Paludibacterium yongneupense | [NiFe] Group 4a | Betaproteobacteria | Neisseriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_018609272.1 | Uliginosibacterium gangwonense | [NiFe] Group 4a | Betaproteobacteria | Rhodocyclales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_014558423.1 | Fervidicoccus fontis | [NiFe] Group 4a | Crenarchaeota | Fervidicoccales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_011751858.1 | Thermofilum pendens | [NiFe] Group 4a | Crenarchaeota | Thermoproteales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_013134545.1 | Arcobacter nitrofigilis | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_021091787.1 | Campylobacter concisus | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_011991841.1 | Campylobacter curvus | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_023384105.1 | Campylobacter fetus | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_005871901.1 | Campylobacter gracilis | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_002948674.1 | Campylobacter showae | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_009650660.1 | Campylobacter sp. FOBRC14 | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_024955559.1 | Sulfurospirillum arcachonense | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_024953588.1 | Sulfurospirillum arcachonense | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_014770116.1 | Sulfurospirillum barnesii | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_012857629.1 | Sulfurospirillum deleyianum | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_025345477.1 | Sulfurospirillum multivorans | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_011139635.1 | Wolinella succinogenes | [NiFe] Group 4a | Epsilonproteobacteria | Campylobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_007473606.1 | Caminibacter mediatlanticus | [NiFe] Group 4a | Epsilonproteobacteria | Nautiliales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_013400781.1 | Geobacillus sp. Y4.1MC1 | [NiFe] Group 4a | Firmicutes | Bacillales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_013876883.1 | Geobacillus thermoglucosidasius | [NiFe] Group 4a | Firmicutes | Bacillales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_022587809.1 | Caldanaerobacter subterraneus | [NiFe] Group 4a | Firmicutes | Thermoanaerobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_025773400.1 | Moorella thermoacetica | [NiFe] Group 4a | Firmicutes | Thermoanaerobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_015051661.1 | Thermacetogenium phaeum | [NiFe] Group 4a | Firmicutes | Thermoanaerobacterales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_017781337.1 | Aeromonas hydrophila | [NiFe] Group 4a | Gammaproteobacteria | Aeromonadales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_005315165.1 | Aeromonas salmonicida | [NiFe] Group 4a | Gammaproteobacteria | Aeromonadales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_019839258.1 | Aeromonas sp. MDS8 | [NiFe] Group 4a | Gammaproteobacteria | Aeromonadales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_005333319.1 | Aeromonas veronii | [NiFe] Group 4a | Gammaproteobacteria | Aeromonadales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_015466266.1 | Psychromonas sp. CNPT3 | [NiFe] Group 4a | Gammaproteobacteria | Alteromonadales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_025820124.1 | Shewanella marina | [NiFe] Group 4a | Gammaproteobacteria | Alteromonadales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_026823431.1 | Arsenophonus nasoniae | [NiFe] Group 4a | Gammaproteobacteria | Enterobacteriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_009113583.1 | Brenneria sp. EniD312 | [NiFe] Group 4a | Gammaproteobacteria | Enterobacteriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_029095340.1 | Budvicia aquatica | [NiFe] Group 4a | Gammaproteobacteria | Enterobacteriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_016538796.1 | Cedecea davisae | [NiFe] Group 4a | Gammaproteobacteria | Enterobacteriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_012134832.1 | Citrobacter koseri | [NiFe] Group 4a | Gammaproteobacteria | Enterobacteriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_012907207.1 | Citrobacter rodentium | [NiFe] Group 4a | Gammaproteobacteria | Enterobacteriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_006687169.1 | Citrobacter youngae | [NiFe] Group 4a | Gammaproteobacteria | Enterobacteriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_007725151.1 | Cronobacter dublinensis | [NiFe] Group 4a | Gammaproteobacteria | Enterobacteriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
WP_007792874.1 | Cronobacter malonaticus | [NiFe] Group 4a | Gammaproteobacteria | Enterobacteriales | Evolving | Sensitive | 6 or 9 | [NiFe]-centre, 1 x [4Fe4S] clusters | NuoL, NuoH, two [FeS] proteins, (three antiporter subunits) |
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