[NiFe] Group 4a-hydrogenase

This entry was last updated at: Feb. 9, 2018, 7:09 a.m.

Properties
Group [NiFe] Group 4: Respiratory H2-evolving [NiFe] hydrogenases
Subgroup [NiFe] Group 4a: Formate hydrogenlyases
Function Directly couples formate oxidation to H2 evolution. It remains unclear whether this process can be coupled to proton-translocation through the transmembrane modules. Reverse reaction occurs in vitro but unresolved whether it occurs in vivo.
Activity H2-evolution
Oxygen tolerance O2-sensitive
Localisation Membrane-bound
Distribution
Ecosystem distribution Animal gastrointestinal tracts
Taxonomic distribution Encoded in Enterobacteria and several other Proteobacteria
Genetic Organisation

Organisation 1: Escherichia coli hyc operon (WP_014639275.1):


Organisation 2: Escherichia coli hyf operon (WP_014641051.1):

Architecture
Structures
    None
Subunits 6 or 9
Subunit description HycE / HyfG (hydrogenase large subunit)
HycG / HyfI (hydrogenase small subunit)
HycF / HyfH (iron-sulfur protein)
HycB / HyfA (iron-sulfur protein)
HycC / HyfB (NuoL-like transmembrane adaptors)
HycD / HyfC (NuoH-like transmembrane adaptors)
Hyf-type enzymes additionally associated with three antiporter-like subunits (HyfD, HyfE, HyfF)
Loosely associated with formate dehydrogenase module (FdhF)
Catalytic site [NiFe]-centre
FeS clusters Proximal: 4Cys[4Fe4S]
Medial: Absent
Distal: Absent
Important Notes
It remains to be resolved whether the formate hydrogenlyase is fermentative (proton-nontranslocating) or respiring (proton-translocating) complex. Based on structural analysis of Complex I suggests, it is possible that the NuoL-like and NuoM-like subunits are proton-translocating. It is likely that Hyf-like complexes can generate membrane potential through its antiporter-like subunits.
Sequences in this class
NCBI AccessionOrganismHydrogenase ClassPhylumOrderActivity (Predicted)Oxygen Tolerance (Predicted)Subunits (Predicted)Metal Centres (Predicted)Accessory Subunits (Predicted)
WP_020454964.1Enterobacter sp. R4-368[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_008499575.1Enterobacter sp. SST3[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_016310471.1Enterorhabdus caecimuris[NiFe] Group 4aActinobacteriaCoriobacteralesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_028027490.1Enterorhabdus mucosicola[NiFe] Group 4aActinobacteriaCoriobacteralesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_027712521.1Erwinia chrysanthemi[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_017802632.1Erwinia toletana[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_002461475.1Escherichia albertii[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_014639275.1Escherichia coli[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_014641051.1Escherichia coli[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_001102339.1Escherichia fergusonii[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_002436255.1Escherichia hermannii[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_014558423.1Fervidicoccus fontis[NiFe] Group 4aCrenarchaeotaFervidicoccalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_013400781.1Geobacillus sp. Y4.1MC1[NiFe] Group 4aFirmicutesBacillalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_013876883.1Geobacillus thermoglucosidasius[NiFe] Group 4aFirmicutesBacillalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_005645455.1Haemophilus haemolyticus[NiFe] Group 4aGammaproteobacteriaPasteurellalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_014065500.1Haemophilus parainfluenzae[NiFe] Group 4aGammaproteobacteriaPasteurellalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_007242420.1Haemophilus pittmaniae[NiFe] Group 4aGammaproteobacteriaPasteurellalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_025797024.1Hafnia alvei[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_025801577.1Hafnia alvei[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_004114746.1Klebsiella oxytoca[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_023342092.1Klebsiella pneumoniae[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_022065323.1Klebsiella variicola[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_007370867.1Kosakonia radicincitans[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_007370513.1Kosakonia radicincitans[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_027275601.1Leminorella grimontii[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_025773400.1Moorella thermoacetica[NiFe] Group 4aFirmicutesThermoanaerobacteralesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_025151932.1Morganella morganii[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_028536385.1Paludibacterium yongneupense[NiFe] Group 4aBetaproteobacteriaNeisserialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_013511773.1Pantoea sp. At-9b[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_005760524.1Pasteurella bettyae[NiFe] Group 4aGammaproteobacteriaPasteurellalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_005764546.1Pasteurella dagmatis[NiFe] Group 4aGammaproteobacteriaPasteurellalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_011092831.1Pectobacterium atrosepticum[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_005366168.1Photobacterium angustum[NiFe] Group 4aGammaproteobacteriaVibrionalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_008989674.1Photobacterium leiognathi[NiFe] Group 4aGammaproteobacteriaVibrionalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_006232936.1Photobacterium profundum[NiFe] Group 4aGammaproteobacteriaVibrionalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_007469705.1Photobacterium sp. AK15[NiFe] Group 4aGammaproteobacteriaVibrionalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_006644813.1Photobacterium sp. SKA34[NiFe] Group 4aGammaproteobacteriaVibrionalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_004245689.1Proteus mirabilis[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_006536160.1Proteus penneri[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_006658446.1Providencia alcalifaciens[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_008912486.1Providencia burhodogranariea[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_006814426.1Providencia rustigianii[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_008916657.1Providencia sneebia[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_015466266.1Psychromonas sp. CNPT3[NiFe] Group 4aGammaproteobacteriaAlteromonadalesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_015696362.1Rahnella aquatilis[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_013574483.1Rahnella sp. Y9602[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_011474970.1Rhodopseudomonas palustris[NiFe] Group 4aAlphaproteobacteriaRhizobialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_008384313.1Rhodovulum sp. PH10[NiFe] Group 4aAlphaproteobacteriaRhodobacteralesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_020845056.1Salmonella bongori[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)
WP_023227550.1Salmonella enterica[NiFe] Group 4aGammaproteobacteriaEnterobacterialesEvolvingSensitive6 or 9[NiFe]-centre, 1 x [4Fe4S] clustersNuoL, NuoH, two [FeS] proteins, (three antiporter subunits)

Literature

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Biochemistry: