[NiFe] Group 3d-hydrogenase

This entry was last updated at: Feb. 9, 2018, 6:37 a.m.

Properties
Group [NiFe] Group 3: Cofactor-coupled bidirectional [NiFe] hydrogenases
Subgroup [NiFe] Group 3d: NAD-coupled
Function Generates reductant for hydrogenotrophic carbon-fixation by directly coupling oxidation of H2 to reduction of NAD. Also acts in reverse direction to catalyse fermentative NADH-dependent production of H2. Electrons flow between H2-activating hydrogenase subunits to NAD-activating diaphorase subunits.
Activity Bidirectional
Oxygen tolerance O2-tolerant
Localisation Cytosolic
Distribution
Ecosystem distribution Diverse soil and aquatic environments
Taxonomic distribution Encoded in diverse Proteobacteria and Cyanobacteria
Genetic Organisation

e.g. Ralstonia eutropha (WP_011154013.1):

Architecture
Structures
  • 5XF9 (Hydrogenophilus thermoluteolus, 2.6 Å resolution, oxidised)
  • 5XFA (Hydrogenophilus thermoluteolus, 2.7 Å resolution, reduced)
Subunits 4 or 5
Subunit description HoxH (hydrogenase large subunit)
HoxY (hydrogenase small subunit)
HoxF (diaphorase catalytic subunit)
HoxU (diaphorase electron transfer subunit)
Photosynthetic bacteria also contain HoxE (iron-sulfur subunit)
Catalytic site [NiFe]-centre
FeS clusters Proximal: 4Cys[4Fe4S]
Medial: Absent
Distal: Absent
Sequences in this class
NCBI AccessionOrganismHydrogenase ClassPhylumOrderActivity (Predicted)Oxygen Tolerance (Predicted)Subunits (Predicted)Metal Centres (Predicted)Accessory Subunits (Predicted)
WP_026596337.1Methylohalobius crimeensis[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_026601561.1Methylomonas sp. 11b[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_026687097.1Azovibrio restrictus[NiFe] Group 3dBetaproteobacteriaRhodocyclalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_026735631.1Fischerella sp. PCC 9605[NiFe] Group 3dCyanobacteriaStigonematalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_027148209.1Methylobacter tundripaludum[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_027159095.1Methylobacter luteus[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_027388897.1Chrysiogenes arsenatis[NiFe] Group 3dChrysiogenetesChrysiogenalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_027404530.1Aphanizomenon flos-aquae[NiFe] Group 3dCyanobacteriaNostocalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_027457859.1Dechloromonas agitata[NiFe] Group 3dBetaproteobacteriaRhodocyclalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_027856531.1Marinobacterium jannaschii[NiFe] Group 3dGammaproteobacteriaAlteromonadalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028085013.1Dolichospermum circinale[NiFe] Group 3dCyanobacteriaNostocalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028088931.1Dolichospermum circinale[NiFe] Group 3dCyanobacteriaNostocalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028317309.1Desulfobulbus elongatus[NiFe] Group 3dDeltaproteobacteriaDesulfobacteralesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028451929.1Chitinilyticum aquatile[NiFe] Group 3dBetaproteobacteriaNeisserialesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028455450.1Chitinilyticum litopenaei[NiFe] Group 3dBetaproteobacteriaNeisserialesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028457902.1Chloroflexus sp. Y-396-1[NiFe] Group 3dChloroflexiChloroflexalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028582678.1Desulfobulbus japonicus[NiFe] Group 3dDeltaproteobacteriaDesulfobacteralesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028585846.1Desulfobulbus mediterraneus[NiFe] Group 3dDeltaproteobacteriaDesulfobacteralesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028864775.1Psychromonas aquimarina[NiFe] Group 3dGammaproteobacteriaAlteromonadalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028947433.1Synechocystis sp. PCC 6714[NiFe] Group 3dCyanobacteriaChroococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_028994701.1Azonexus hydrophilus[NiFe] Group 3dBetaproteobacteriaRhodocyclalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_029133296.1Sedimenticola selenatireducens[NiFe] Group 3dGammaproteobacteriaUnclassifiedBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_029165455.1Aminiphilus circumscriptus[NiFe] Group 3dSynergistetesSynergistalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_029552892.1Synechococcus sp. CB0101[NiFe] Group 3dCyanobacteriaChroococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein

Literature

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