[NiFe] Group 3d-hydrogenase

This entry was last updated at: Feb. 9, 2018, 6:37 a.m.

Properties
Group [NiFe] Group 3: Cofactor-coupled bidirectional [NiFe] hydrogenases
Subgroup [NiFe] Group 3d: NAD-coupled
Function Generates reductant for hydrogenotrophic carbon-fixation by directly coupling oxidation of H2 to reduction of NAD. Also acts in reverse direction to catalyse fermentative NADH-dependent production of H2. Electrons flow between H2-activating hydrogenase subunits to NAD-activating diaphorase subunits.
Activity Bidirectional
Oxygen tolerance O2-tolerant
Localisation Cytosolic
Distribution
Ecosystem distribution Diverse soil and aquatic environments
Taxonomic distribution Encoded in diverse Proteobacteria and Cyanobacteria
Genetic Organisation

e.g. Ralstonia eutropha (WP_011154013.1):

Architecture
Structures
  • 5XF9 (Hydrogenophilus thermoluteolus, 2.6 Å resolution, oxidised)
  • 5XFA (Hydrogenophilus thermoluteolus, 2.7 Å resolution, reduced)
Subunits 4 or 5
Subunit description HoxH (hydrogenase large subunit)
HoxY (hydrogenase small subunit)
HoxF (diaphorase catalytic subunit)
HoxU (diaphorase electron transfer subunit)
Photosynthetic bacteria also contain HoxE (iron-sulfur subunit)
Catalytic site [NiFe]-centre
FeS clusters Proximal: 4Cys[4Fe4S]
Medial: Absent
Distal: Absent
Sequences in this class
NCBI AccessionOrganismHydrogenase ClassPhylumOrderActivity (Predicted)Oxygen Tolerance (Predicted)Subunits (Predicted)Metal Centres (Predicted)Accessory Subunits (Predicted)
WP_017839865.1Methylomicrobium buryatense[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_013816969.1Methylomonas methanica[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_026601561.1Methylomonas sp. 11b[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_020482704.1Methylomonas sp. MK1[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_020565381.1Methylosarcina fibrata[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_024299641.1Methylosarcina lacus[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_019865758.1Methylovulum miyakonense[NiFe] Group 3dGammaproteobacteriaMethylococcalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_011394103.1Hahella chejuensis[NiFe] Group 3dGammaproteobacteriaOceanospirillalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_020410523.1Hahella ganghwensis[NiFe] Group 3dGammaproteobacteriaOceanospirillalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_020161995.1Cycloclasticus pugetii[NiFe] Group 3dGammaproteobacteriaThiotrichalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_015005599.1Cycloclasticus sp. P1[NiFe] Group 3dGammaproteobacteriaThiotrichalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_016389591.1Cycloclasticus sp. PY97M[NiFe] Group 3dGammaproteobacteriaThiotrichalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_020932782.1Cycloclasticus zancles[NiFe] Group 3dGammaproteobacteriaThiotrichalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_020393771.1Thiothrix disciformis[NiFe] Group 3dGammaproteobacteriaThiotrichalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_029133296.1Sedimenticola selenatireducens[NiFe] Group 3dGammaproteobacteriaUnclassifiedBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_005505390.1Grimontia hollisae[NiFe] Group 3dGammaproteobacteriaVibrionalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_029165455.1Aminiphilus circumscriptus[NiFe] Group 3dSynergistetesSynergistalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_013048933.1Aminobacterium colombiense[NiFe] Group 3dSynergistetesSynergistalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_024821667.1Aminobacterium mobile[NiFe] Group 3dSynergistetesSynergistalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_009200281.1Anaerobaculum hydrogeniformans[NiFe] Group 3dSynergistetesSynergistalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_014807493.1Anaerobaculum mobile[NiFe] Group 3dSynergistetesSynergistalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_005661842.1Dethiosulfovibrio peptidovorans[NiFe] Group 3dSynergistetesSynergistalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_014163745.1Thermovirga lienii[NiFe] Group 3dSynergistetesSynergistalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein
WP_009849435.1Mariprofundus ferrooxydans[NiFe] Group 3dZetaproteobacteriaMariprofundalesBidirectionalTolerant4[NiFe]-centre, 1 x [4Fe4S] clustersDiaphorase, [FeS] protein

Literature

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