This entry was last updated at: Feb. 9, 2018, 7:34 a.m.
Group | [NiFe] Group 3: Cofactor-coupled bidirectional [NiFe] hydrogenases |
Subgroup | [NiFe] Group 3b: NADP-coupled |
Function | Directly couples oxidation of NADPH to fermentative evolution of H2. Reverse reaction may also occur. Some complexes controversially proposed to harbour sulfhydrogenase activity. |
Activity | Bidirectional |
Oxygen tolerance | O2-tolerant |
Localisation | Cytosolic |
Ecosystem distribution | Diverse soil and aquatic environments |
Taxonomic distribution | Encoded in multiple diverse bacterial and archaeal phyla |
e.g. Pyrococcus furiosus (WP_011012029.1):
Structures | |
Subunits | 4 |
Subunit description | HyhL (hydrogenase large subunit) HyhS (hydrogenase small subunit) HyhG (diaphorase catalytic subunit) HyhB (diaphorase electron transfer subunit) |
Catalytic site | [NiFe]-centre |
FeS clusters | Proximal: 4Cys[4Fe4S] Medial: 4Cys[4Fe4S] Distal: 4Cys[4Fe4S] |
NCBI Accession | Organism | Hydrogenase Class | Phylum | Order | Activity (Predicted) | Oxygen Tolerance (Predicted) | Subunits (Predicted) | Metal Centres (Predicted) | Accessory Subunits (Predicted) |
---|---|---|---|---|---|---|---|---|---|
WP_012280244.1 | Francisella philomiragia | [NiFe] Group 3b | Gammaproteobacteria | Thiotrichales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013923702.1 | Francisella sp. TX077308 | [NiFe] Group 3b | Gammaproteobacteria | Thiotrichales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_026311168.1 | Frankia sp. BMG5.12 | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_027140596.1 | Frankia sp. CN3 | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011438850.1 | Frankia sp. CcI3 | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_023839999.1 | Frankia sp. CcI6 | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012530401.1 | Geobacter bemidjiensis | [NiFe] Group 3b | Deltaproteobacteria | Desulfuromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_026841827.1 | Geobacter bremensis | [NiFe] Group 3b | Deltaproteobacteria | Desulfuromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012646977.1 | Geobacter daltonii | [NiFe] Group 3b | Deltaproteobacteria | Desulfuromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_015720565.1 | Geobacter sp. M18 | [NiFe] Group 3b | Deltaproteobacteria | Desulfuromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_015837532.1 | Geobacter sp. M21 | [NiFe] Group 3b | Deltaproteobacteria | Desulfuromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011938049.1 | Geobacter uraniireducens | [NiFe] Group 3b | Deltaproteobacteria | Desulfuromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_006331106.1 | Gordonia rhizosphera | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_008526674.1 | Halorhabdus tiamatea | [NiFe] Group 3b | Euryarchaeota | Halobacteriales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_015790329.1 | Halorhabdus utahensis | [NiFe] Group 3b | Euryarchaeota | Halobacteriales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_025280829.1 | Halorhodospira halochloris | [NiFe] Group 3b | Gammaproteobacteria | Chromatiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_008286766.1 | Hydrogenivirga sp. 128-5-R1-1 | [NiFe] Group 3b | Aquificae | Aquificales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012963143.1 | Hydrogenobacter thermophilus | [NiFe] Group 3b | Aquificae | Aquificales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012308976.1 | Korarchaeum cryptofilum | [NiFe] Group 3b | Korarchaeota | Unclassified | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
CUU06124.1 | Kryptonium thompsoni | [NiFe] Group 3b | Kryptonia | N/A | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_025357598.1 | Kutzneria albida | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_028379943.1 | Legionella cherrii | [NiFe] Group 3b | Gammaproteobacteria | Legionellales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_006871434.1 | Legionella drancourtii | [NiFe] Group 3b | Gammaproteobacteria | Legionellales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_028385762.1 | Legionella geestiana | [NiFe] Group 3b | Gammaproteobacteria | Legionellales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_003635857.1 | Legionella longbeachae | [NiFe] Group 3b | Gammaproteobacteria | Legionellales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_028383773.1 | Legionella moravica | [NiFe] Group 3b | Gammaproteobacteria | Legionellales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_025386399.1 | Legionella oakridgensis | [NiFe] Group 3b | Gammaproteobacteria | Legionellales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_027222572.1 | Legionella pneumophila | [NiFe] Group 3b | Gammaproteobacteria | Legionellales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_027271172.1 | Legionella sainthelensi | [NiFe] Group 3b | Gammaproteobacteria | Legionellales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_017290644.1 | Leptolyngbya boryana | [NiFe] Group 3b | Cyanobacteria | Oscillatoriales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_009021278.1 | Luminiphilus syltensis | [NiFe] Group 3b | Gammaproteobacteria | Unclassified | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011712560.1 | Magnetococcus marinus | [NiFe] Group 3b | Alphaproteobacteria | Magnetococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_024079550.1 | Magnetospirillum gryphiswaldense | [NiFe] Group 3b | Alphaproteobacteria | Rhodospirillales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012136580.1 | Marinobacter lipolyticus | [NiFe] Group 3b | Gammaproteobacteria | Alteromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_008939163.1 | Marinobacter santoriniensis | [NiFe] Group 3b | Gammaproteobacteria | Alteromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_027854910.1 | Marinobacterium litorale | [NiFe] Group 3b | Gammaproteobacteria | Alteromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_020680743.1 | Marinobacterium rhizophilum | [NiFe] Group 3b | Gammaproteobacteria | Alteromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_010321726.1 | Marinobacterium stanieri | [NiFe] Group 3b | Gammaproteobacteria | Alteromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_020653150.1 | Massilia niastensis | [NiFe] Group 3b | Betaproteobacteria | Burkholderiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_027844918.1 | Mastigocoleus testarum | [NiFe] Group 3b | Cyanobacteria | Stigonematales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_027877222.1 | Meiothermus cerbereus | [NiFe] Group 3b | Deinococcus-Thermus | Thermales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_048090768.1 | Methanoperedens nitroreducens | [NiFe] Group 3b | Euryarchaeota | Methanosarcinales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_048088262.1 | Methanoperedens nitroreducens | [NiFe] Group 3b | Euryarchaeota | Methanosarcinales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_009061764.1 | Methylacidiphilum fumariolicum | [NiFe] Group 3b | Verrucomicrobia | Verrucomicrobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012464725.1 | Methylacidiphilum infernorum | [NiFe] Group 3b | Verrucomicrobia | Methylacidiphilales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_026610481.1 | Methylocaldum szegediense | [NiFe] Group 3b | Gammaproteobacteria | Methylococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_016920195.1 | Methylocystis parvus | [NiFe] Group 3b | Alphaproteobacteria | Rhizobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_018407885.1 | Methylocystis rosea | [NiFe] Group 3b | Alphaproteobacteria | Rhizobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_026598467.1 | Methylocystis sp. LW5 | [NiFe] Group 3b | Alphaproteobacteria | Rhizobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_014890330.1 | Methylocystis sp. SC2 | [NiFe] Group 3b | Alphaproteobacteria | Rhizobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
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