This entry was last updated at: Feb. 9, 2018, 7:34 a.m.
Group | [NiFe] Group 3: Cofactor-coupled bidirectional [NiFe] hydrogenases |
Subgroup | [NiFe] Group 3b: NADP-coupled |
Function | Directly couples oxidation of NADPH to fermentative evolution of H2. Reverse reaction may also occur. Some complexes controversially proposed to harbour sulfhydrogenase activity. |
Activity | Bidirectional |
Oxygen tolerance | O2-tolerant |
Localisation | Cytosolic |
Ecosystem distribution | Diverse soil and aquatic environments |
Taxonomic distribution | Encoded in multiple diverse bacterial and archaeal phyla |
e.g. Pyrococcus furiosus (WP_011012029.1):
Structures | |
Subunits | 4 |
Subunit description | HyhL (hydrogenase large subunit) HyhS (hydrogenase small subunit) HyhG (diaphorase catalytic subunit) HyhB (diaphorase electron transfer subunit) |
Catalytic site | [NiFe]-centre |
FeS clusters | Proximal: 4Cys[4Fe4S] Medial: 4Cys[4Fe4S] Distal: 4Cys[4Fe4S] |
NCBI Accession | Organism | Hydrogenase Class | Phylum | Order | Activity (Predicted) | Oxygen Tolerance (Predicted) | Subunits (Predicted) | Metal Centres (Predicted) | Accessory Subunits (Predicted) |
---|---|---|---|---|---|---|---|---|---|
WP_010933552.1 | Chlorobaculum tepidum | [NiFe] Group 3b | Chlorobi | Chlorobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011012029.1 | Pyrococcus furiosus | [NiFe] Group 3b | Euryarchaeota | Thermococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011012478.1 | Pyrococcus furiosus | [NiFe] Group 3b | Euryarchaeota | Thermococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011251019.1 | Thermococcus kodakarensis | [NiFe] Group 3b | Euryarchaeota | Thermococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011311775.1 | Thiobacillus denitrificans | [NiFe] Group 3b | Betaproteobacteria | Hydrogenophilales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011361294.1 | Chlorobium chlorochromatii | [NiFe] Group 3b | Chlorobi | Chlorobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011416040.1 | Syntrophus aciditrophicus | [NiFe] Group 3b | Deltaproteobacteria | Syntrophobacterales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011438850.1 | Frankia sp. CcI3 | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011593368.1 | Rhodococcus jostii | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011712560.1 | Magnetococcus marinus | [NiFe] Group 3b | Alphaproteobacteria | Magnetococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011719855.1 | Acidothermus cellulolyticus | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011745973.1 | Chlorobium phaeobacteroides | [NiFe] Group 3b | Chlorobi | Chlorobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_011938049.1 | Geobacter uraniireducens | [NiFe] Group 3b | Deltaproteobacteria | Desulfuromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012136580.1 | Marinobacter lipolyticus | [NiFe] Group 3b | Gammaproteobacteria | Alteromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012237207.1 | Sorangium cellulosum | [NiFe] Group 3b | Deltaproteobacteria | Myxococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012280244.1 | Francisella philomiragia | [NiFe] Group 3b | Gammaproteobacteria | Thiotrichales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012308976.1 | Korarchaeum cryptofilum | [NiFe] Group 3b | Korarchaeota | Unclassified | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012383518.1 | Beijerinckia indica | [NiFe] Group 3b | Alphaproteobacteria | Rhizobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012464725.1 | Methylacidiphilum infernorum | [NiFe] Group 3b | Verrucomicrobia | Methylacidiphilales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012466994.1 | Chlorobium limicola | [NiFe] Group 3b | Chlorobi | Chlorobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012498899.1 | Chloroherpeton thalassium | [NiFe] Group 3b | Chlorobi | Chlorobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012501574.1 | Chlorobaculum parvum | [NiFe] Group 3b | Chlorobi | Chlorobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012506474.1 | Prosthecochloris aestuarii | [NiFe] Group 3b | Chlorobi | Chlorobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012509156.1 | Pelodictyon phaeoclathratiforme | [NiFe] Group 3b | Chlorobi | Chlorobiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012530401.1 | Geobacter bemidjiensis | [NiFe] Group 3b | Deltaproteobacteria | Desulfuromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012536449.1 | Acidithiobacillus ferrooxidans | [NiFe] Group 3b | Gammaproteobacteria | Acidithiobacillales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012544964.1 | Thermodesulfovibrio yellowstonii | [NiFe] Group 3b | Nitrospirae | Nitrospirales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012571009.1 | Thermococcus onnurineus | [NiFe] Group 3b | Euryarchaeota | Thermococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012571493.1 | Thermococcus onnurineus | [NiFe] Group 3b | Euryarchaeota | Thermococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012606689.1 | Acidithiobacillus ferrooxidans | [NiFe] Group 3b | Gammaproteobacteria | Acidithiobacillales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012628086.1 | Cyanothece sp. PCC 7425 | [NiFe] Group 3b | Cyanobacteria | Chroococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012637708.1 | Thioalkalivibrio sulfidiphilus | [NiFe] Group 3b | Gammaproteobacteria | Chromatiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012646977.1 | Geobacter daltonii | [NiFe] Group 3b | Deltaproteobacteria | Desulfuromonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012674555.1 | Sulfurihydrogenibium azorense | [NiFe] Group 3b | Aquificae | Aquificales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012676609.1 | Persephonella marina | [NiFe] Group 3b | Aquificae | Aquificales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012699124.1 | Azotobacter vinelandii | [NiFe] Group 3b | Gammaproteobacteria | Pseudomonadales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012891383.1 | Streptosporangium roseum | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012963143.1 | Hydrogenobacter thermophilus | [NiFe] Group 3b | Aquificae | Aquificales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012970030.1 | Allochromatium vinosum | [NiFe] Group 3b | Gammaproteobacteria | Chromatiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_012998941.1 | Streptomyces scabiei | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013018709.1 | Stackebrandtia nassauensis | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013032567.1 | Nitrosococcus halophilus | [NiFe] Group 3b | Gammaproteobacteria | Chromatiales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013132103.1 | Thermobispora bispora | [NiFe] Group 3b | Actinobacteria | Actinomycetales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013218375.1 | Dehalogenimonas lykanthroporepellens | [NiFe] Group 3b | Chloroflexi | Dehalogenimonas | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013466346.1 | Thermococcus barophilus | [NiFe] Group 3b | Euryarchaeota | Thermococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013466811.1 | Thermococcus barophilus | [NiFe] Group 3b | Euryarchaeota | Thermococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013537242.1 | Thermovibrio ammonificans | [NiFe] Group 3b | Aquificae | Desulfurobacteriales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013638346.1 | Desulfurobacterium thermolithotrophum | [NiFe] Group 3b | Aquificae | Desulfurobacteriales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013706649.1 | Desulfobacca acetoxidans | [NiFe] Group 3b | Deltaproteobacteria | Syntrophobacterales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
WP_013749017.1 | Pyrococcus sp. NA2 | [NiFe] Group 3b | Euryarchaeota | Thermococcales | Bidirectional | Tolerant | 4 | [NiFe]-centre, 3 x [4Fe4S] clusters | Diaphorase, [FeS] protein |
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