This entry was last updated at: Feb. 9, 2018, 7:09 a.m.
Group | [NiFe] Group 1: Respiratory H2-uptake [NiFe] hydrogenases |
Subgroup | [NiFe] Group 1b: Prototypical |
Function | Hydrogenotrophic respiration using sulfate, fumarate, nitrate, metals, and azo compounds as terminal electron acceptors. Enzyme transfers H2-liberated electrons through cytochromes to terminal reductase. |
Activity | H2-uptake (unidirectional) |
Oxygen tolerance | O2-sensitive |
Localisation | Membrane-bound or periplasmic |
Ecosystem distribution | Anoxic soils and sediments, marine waters, animal gastrointestinal tracts |
Taxonomic distribution | Widespread in Deltaproteobacteria and Epsilonproteobacteria |
e.g. Wolinella succinogenes (WP_011139497.1):
Structures |
|
Subunits | 3 |
Subunit description | HynB (hydrogenase large subunit) HynA (hydrogenase small subunit) HynC (cytochrome b subunit) In Deltaproteobacteria, CycA (cytochrome c3 subunit) substitutes for HynC |
Catalytic site | [NiFe]-centre |
FeS clusters | Proximal: 4Cys[4Fe4S] or 3Cys1Asn[4Fe4S] Medial: 3Cys[3Fe4S] Distal: 3Cys1His[4Fe4S] |
NCBI Accession | Organism | Hydrogenase Class | Phylum | Order | Activity (Predicted) | Oxygen Tolerance (Predicted) | Subunits (Predicted) | Metal Centres (Predicted) | Accessory Subunits (Predicted) |
---|---|---|---|---|---|---|---|---|---|
WP_023926858.1 | Helicobacter macacae | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_013023319.1 | Helicobacter mustelae | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_005020543.1 | Helicobacter pullorum | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_000038050.1 | Helicobacter pylori | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_026944262.1 | Helicobacter rodentium | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_006564409.1 | Helicobacter suis | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_006802201.1 | Helicobacter winghamensis | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_013553045.1 | Nitratifractor salsuginis | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_013460908.1 | Sulfuricurvum kujiense | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_013460913.1 | Sulfuricurvum kujiense | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_013327110.1 | Sulfurimonas autotrophica | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_011373064.1 | Sulfurimonas denitrificans | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_008339404.1 | Sulfurimonas gotlandica | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_021286544.1 | Sulfurimonas sp. AST-10 | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_024954007.1 | Sulfurospirillum arcachonense | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_014769320.1 | Sulfurospirillum barnesii | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_012856887.1 | Sulfurospirillum deleyianum | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_025344560.1 | Sulfurospirillum multivorans | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_011139497.1 | Wolinella succinogenes | [NiFe] Group 1b | Epsilonproteobacteria | Campylobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_027390843.1 | Chrysiogenes arsenatis | [NiFe] Group 1b | Chrysiogenetes | Chrysiogenales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_013505701.1 | Desulfurispirillum indicum | [NiFe] Group 1b | Chrysiogenetes | Chrysiogenales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_014353799.1 | Sulfobacillus acidophilus | [NiFe] Group 1b | Firmicutes | Clostridiales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_020374232.1 | Sulfobacillus thermosulfidooxidans | [NiFe] Group 1b | Firmicutes | Clostridiales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_028324338.1 | Desulfatirhabdium butyrativorans | [NiFe] Group 1b | Deltaproteobacteria | Desulfobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_020585310.1 | Desulfobacter curvatus | [NiFe] Group 1b | Deltaproteobacteria | Desulfobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_028320012.1 | Desulfobacterium anilini | [NiFe] Group 1b | Deltaproteobacteria | Desulfobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_015904103.1 | Desulfobacterium autotrophicum | [NiFe] Group 1b | Deltaproteobacteria | Desulfobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_022666958.1 | Desulfospira joergensenii | [NiFe] Group 1b | Deltaproteobacteria | Desulfobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_006964156.1 | Desulfotignum phosphitoxidans | [NiFe] Group 1b | Deltaproteobacteria | Desulfobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_013163129.1 | Desulfurivibrio alkaliphilus | [NiFe] Group 1b | Epsilonproteobacteria | Desulfobacterales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_009380705.1 | Bilophila sp. 4_1_30 | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_005027591.1 | Bilophila wadsworthia | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_013258222.1 | Desulfarculus baarsii | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_028586938.1 | Desulfocurvus vexinensis | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_015750727.1 | Desulfohalobium retbaense | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_015772985.1 | Desulfomicrobium baculatum | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_028577451.1 | Desulfomicrobium escambiense | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_028574549.1 | Desulfonatronovibrio hydrogenovorans | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_028572157.1 | Desulfonatronum lacustre | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_029966051.1 | Desulfonauticus sp. A7A | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_027361001.1 | Desulfovibrio acrylicus | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_013515487.1 | Desulfovibrio aespoeensis | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_014261062.1 | Desulfovibrio africanus | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_011369403.1 | Desulfovibrio alaskensis | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_011368035.1 | Desulfovibrio alaskensis | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_029459118.1 | Desulfovibrio alcoholivorans | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_020888131.1 | Desulfovibrio alkalitolerans | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_027175156.1 | Desulfovibrio aminophilus | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_027179541.1 | Desulfovibrio bastinii | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
WP_027177852.1 | Desulfovibrio bastinii | [NiFe] Group 1b | Deltaproteobacteria | Desulfovibrionales | Anaerobic Uptake | Sensitive | 3 | [NiFe]-centre, 2 x [4Fe4S] clusters, 1 x [3Fe4S] cluster | Cytochrome |
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