This entry was last updated at: Feb. 9, 2018, 7:29 a.m.
Group | [FeFe]-hydrogenases |
Subgroup | [FeFe] Group A1: Prototypical |
Function | Fermentative or photobiological evolution of H2 using reduced ferredoxin as an electron donor. |
Activity | H2-evolution |
Oxygen tolerance | O2-labile |
Localisation | Cytosolic |
Ecosystem distribution | Anoxic waters, soils, and sediments, gastrointestinal tracts |
Taxonomic distribution | Widespread in anaerobic bacteria and unicellular eukaryotes |
Organisation 1: Chlamydomonas reinhardtii (XP_001693376.1):
Organisation 2: Trichomonas vaginalis (XP_001330775.1):
Organisation 3: Clostridium pasteurianum (WP_004455619.1):
Organisation 4: Desulfovibrio vulgaris (WP_010939057.1):
Organisation 5: Shewanella oneidensis (WP_011073665.1):
Organisation 6: Trichomonas vaginalis (XP_001580488.1):
Structures | |
Subunits | N/A |
Subunit description | HydA (catalytic subunit) In organisation 4 and 5, the catalytic subunit is split into a large subunit (HydA) and small subunit (HydS) In organisation 5, a cytochrome b subunit (HydH) is present In organisation 6, the hydrogenase domain is fused to a nitrate reductase or sulfite reductase domain |
Catalytic site | [FeFe]-centre |
FeS clusters | Organisation 1: Absent Organisation 2: 2 [4Fe4S] clusters Organisation 3: 3 [4Fe4S] clusters, 1 [2Fe2S] cluster Organisation 4: 2 [4Fe4S] clusters Organisation 5: 2 [4Fe4S] clusters Organisation 6: 3 [4Fe4S] clusters, 1 [2Fe2S] cluster |
NCBI Accession | Organism | Hydrogenase Class | Phylum | Order | Activity (Predicted) | Oxygen Tolerance (Predicted) | Subunits (Predicted) | Metal Centres (Predicted) | Accessory Subunits (Predicted) |
---|---|---|---|---|---|---|---|---|---|
WP_018703705.1 | Anaeromusa acidaminophila | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_026329186.1 | Zymophilus raffinosivorans | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_027396346.1 | Anaerovibrio lipolyticus | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_027938424.1 | Anaeroarcus burkinensis | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_028255372.1 | Veillonella magna | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_028256896.1 | Veillonella montpellierensis | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_011697718.1 | Syntrophobacter fumaroxidans | [FeFe] Group A1 | Deltaproteobacteria | Syntrophobacterales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
WP_014812866.1 | Desulfomonile tiedjei | [FeFe] Group A1 | Deltaproteobacteria | Syntrophobacterales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
XP_002295160.1 | Thalassiosira pseudonana | [FeFe] Group A1 | Heterokonta | Thalassiosirales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_013756852.1 | Thermodesulfobium narugense | [FeFe] Group A1 | Firmicutes | Thermoanaerobacterales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_015739747.1 | Ammonifex degensii | [FeFe] Group A1 | Firmicutes | Thermoanaerobacterales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_013907122.1 | Thermodesulfatator indicus | [FeFe] Group A1 | Thermodesulfobacteria | Thermodesulfobacteriales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_013907125.1 | Thermodesulfatator indicus | [FeFe] Group A1 | Thermodesulfobacteria | Thermodesulfobacteriales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_013907974.1 | Thermodesulfatator indicus | [FeFe] Group A1 | Thermodesulfobacteria | Thermodesulfobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_022852507.1 | Thermodesulfatator atlanticus | [FeFe] Group A1 | Thermodesulfobacteria | Thermodesulfobacteriales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_022853375.1 | Thermodesulfatator atlanticus | [FeFe] Group A1 | Thermodesulfobacteria | Thermodesulfobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_022854721.1 | Thermodesulfobacterium thermophilum | [FeFe] Group A1 | Thermodesulfobacteria | Thermodesulfobacteriales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_028841196.1 | Thermodesulfobacterium hveragerdense | [FeFe] Group A1 | Thermodesulfobacteria | Thermodesulfobacteriales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_006492050.1 | Mesotoga infera | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_008193913.1 | Thermotoga sp. EMP | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_011943326.1 | Thermotoga petrophila | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_011993425.1 | Fervidobacterium nodosum | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012003383.1 | Thermotoga lettingae | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012057804.1 | Thermosipho melanesiensis | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012310723.1 | Thermotoga sp. RQ2 | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012580432.1 | Thermosipho africanus | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012744686.1 | Kosmotoga olearia | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012896175.1 | Thermotoga naphthophila | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_013931422.1 | Thermotoga thermarum | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_014450900.1 | Fervidobacterium pennivorans | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_014450901.1 | Fervidobacterium pennivorans | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_014730285.1 | Mesotoga prima | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_015918980.1 | Thermotoga neapolitana | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_024103747.1 | Thermotoga maritima | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_028843928.1 | Thermotoga elfii | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_024851245.1 | Thiomicrospira kuenenii | [FeFe] Group A1 | Gammaproteobacteria | Thiothrichales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_028485709.1 | Thiomicrospira chilensis | [FeFe] Group A1 | Gammaproteobacteria | Thiothrichales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_029909256.1 | Hydrogenovibrio marinus | [FeFe] Group A1 | Gammaproteobacteria | Thiothrichales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_029933546.1 | Thiomicrospira pelophila | [FeFe] Group A1 | Gammaproteobacteria | Thiothrichales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
XP_001305709.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
XP_001310180.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
XP_001318941.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre | None, incomplete sequence |
XP_001322682.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | Fusion with ferredoxin reductase |
XP_001324510.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
XP_001328981.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
XP_001330775.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
XP_001580286.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
XP_001580488.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | Fusion with sulfite reductase |
XP_001584012.1 | Trichomonas vaginalis | [FeFe] Group A1 | Metamonada | Trichomonadida | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_017890120.1 | Caldatribacterium californiense | [FeFe] Group A1 | Atribacteria | Unclassified | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 2 x [2Fe2S] cluster | None |
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