This entry was last updated at: Feb. 9, 2018, 7:29 a.m.
Group | [FeFe]-hydrogenases |
Subgroup | [FeFe] Group A1: Prototypical |
Function | Fermentative or photobiological evolution of H2 using reduced ferredoxin as an electron donor. |
Activity | H2-evolution |
Oxygen tolerance | O2-labile |
Localisation | Cytosolic |
Ecosystem distribution | Anoxic waters, soils, and sediments, gastrointestinal tracts |
Taxonomic distribution | Widespread in anaerobic bacteria and unicellular eukaryotes |
Organisation 1: Chlamydomonas reinhardtii (XP_001693376.1):
Organisation 2: Trichomonas vaginalis (XP_001330775.1):
Organisation 3: Clostridium pasteurianum (WP_004455619.1):
Organisation 4: Desulfovibrio vulgaris (WP_010939057.1):
Organisation 5: Shewanella oneidensis (WP_011073665.1):
Organisation 6: Trichomonas vaginalis (XP_001580488.1):
Structures | |
Subunits | N/A |
Subunit description | HydA (catalytic subunit) In organisation 4 and 5, the catalytic subunit is split into a large subunit (HydA) and small subunit (HydS) In organisation 5, a cytochrome b subunit (HydH) is present In organisation 6, the hydrogenase domain is fused to a nitrate reductase or sulfite reductase domain |
Catalytic site | [FeFe]-centre |
FeS clusters | Organisation 1: Absent Organisation 2: 2 [4Fe4S] clusters Organisation 3: 3 [4Fe4S] clusters, 1 [2Fe2S] cluster Organisation 4: 2 [4Fe4S] clusters Organisation 5: 2 [4Fe4S] clusters Organisation 6: 3 [4Fe4S] clusters, 1 [2Fe2S] cluster |
NCBI Accession | Organism | Hydrogenase Class | Phylum | Order | Activity (Predicted) | Oxygen Tolerance (Predicted) | Subunits (Predicted) | Metal Centres (Predicted) | Accessory Subunits (Predicted) |
---|---|---|---|---|---|---|---|---|---|
WP_015851212.1 | Desulfovibrio salexigens | [FeFe] Group A1 | Deltaproteobacteria | Desulfovibrionales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
WP_022663178.1 | Desulfovibrio longus | [FeFe] Group A1 | Deltaproteobacteria | Desulfovibrionales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
WP_027176561.1 | Desulfovibrio aminophilus | [FeFe] Group A1 | Deltaproteobacteria | Desulfovibrionales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
WP_027179345.1 | Desulfovibrio bastinii | [FeFe] Group A1 | Deltaproteobacteria | Desulfovibrionales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
WP_027183226.1 | Desulfovibrio inopinatus | [FeFe] Group A1 | Deltaproteobacteria | Desulfovibrionales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
WP_027191878.1 | Desulfovibrio putealis | [FeFe] Group A1 | Deltaproteobacteria | Desulfovibrionales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
WP_027722058.1 | Desulfovibrio zosterae | [FeFe] Group A1 | Deltaproteobacteria | Desulfovibrionales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
WP_028586843.1 | Desulfocurvus vexinensis | [FeFe] Group A1 | Deltaproteobacteria | Desulfovibrionales | Evolving | Labile | 2 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit |
WP_005026529.1 | Bilophila wadsworthia | [FeFe] Group A1 | Deltaproteobacteria | Desulfovibrionales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
XP_001709915.1 | Giardia lamblia | [FeFe] Group A1 | Metamonada | Diplomonadida | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_002607524.1 | Erysipelatoclostridium innocuum | [FeFe] Group A1 | Firmicutes | Erysipelotrichales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_006627482.1 | Bulleidia extructa | [FeFe] Group A1 | Firmicutes | Erysipelotrichales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_028077982.1 | Solobacterium moorei | [FeFe] Group A1 | Firmicutes | Erysipelotrichales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
XP_005854537.1 | Nannochloropsis gaditana | [FeFe] Group A1 | Heterokonta | Eustigmatales | Evolving | Labile | 1 | [FeFe]-centre | None |
WP_005884626.1 | Fusobacterium mortiferum | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005886368.1 | Fusobacterium mortiferum | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005952086.1 | Fusobacterium varium | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005957191.1 | Fusobacterium necrophorum | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_005958327.1 | Fusobacterium necrophorum | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005976079.1 | Fusobacterium ulcerans | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005981915.1 | Fusobacterium ulcerans | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_010680041.1 | Fusobacterium gonidiaformans | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_013387092.1 | Ilyobacter polytrophus | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_013388849.1 | Ilyobacter polytrophus | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_023050374.1 | Cetobacterium somerae | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_023051580.1 | Cetobacterium somerae | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_027128738.1 | Fusobacterium perfoetens | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_027129041.1 | Fusobacterium perfoetens | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_028856877.1 | Psychrilyobacter atlanticus | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_005035184.1 | Holophaga foetida | [FeFe] Group A1 | Acidobacteria | Holophagales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_005038203.1 | Holophaga foetida | [FeFe] Group A1 | Acidobacteria | Holophagales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_024788990.1 | Lebetimonas sp. JH292 | [FeFe] Group A1 | Epsilonproteobacteria | Nautiliales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
WP_012545114.1 | Thermodesulfovibrio yellowstonii | [FeFe] Group A1 | Nitrospirae | Nitrospirales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_028842274.1 | Thermodesulfovibrio islandicus | [FeFe] Group A1 | Nitrospirae | Nitrospirales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
XP_002674266.1 | Naegleria gruberi | [FeFe] Group A1 | Percolozoa | Schizopyrenida | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_004697562.1 | Veillonella parvula | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005375825.1 | Veillonella atypica | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005378576.1 | Veillonella atypica | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005382858.1 | Veillonella atypica | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005384713.1 | Veillonella atypica | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005384882.1 | Veillonella dispar | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_005385706.1 | Veillonella dispar | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_006556240.1 | Veillonella ratti | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_006789933.1 | Anaeroglobus geminatus | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_006942403.1 | Megasphaera micronuciformis | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_007951362.1 | Pelosinus fermentans | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_009145476.1 | Phascolarctobacterium succinatutens | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_014015846.1 | Megasphaera elsdenii | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_014016432.1 | Megasphaera elsdenii | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_014423937.1 | Selenomonas ruminantium | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 3 | [FeFe]-centre, 2 x [4Fe4S] clusters | Small subunit, cytochrome b |
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