This entry was last updated at: Feb. 9, 2018, 7:29 a.m.
Group | [FeFe]-hydrogenases |
Subgroup | [FeFe] Group A1: Prototypical |
Function | Fermentative or photobiological evolution of H2 using reduced ferredoxin as an electron donor. |
Activity | H2-evolution |
Oxygen tolerance | O2-labile |
Localisation | Cytosolic |
Ecosystem distribution | Anoxic waters, soils, and sediments, gastrointestinal tracts |
Taxonomic distribution | Widespread in anaerobic bacteria and unicellular eukaryotes |
Organisation 1: Chlamydomonas reinhardtii (XP_001693376.1):
Organisation 2: Trichomonas vaginalis (XP_001330775.1):
Organisation 3: Clostridium pasteurianum (WP_004455619.1):
Organisation 4: Desulfovibrio vulgaris (WP_010939057.1):
Organisation 5: Shewanella oneidensis (WP_011073665.1):
Organisation 6: Trichomonas vaginalis (XP_001580488.1):
Structures | |
Subunits | N/A |
Subunit description | HydA (catalytic subunit) In organisation 4 and 5, the catalytic subunit is split into a large subunit (HydA) and small subunit (HydS) In organisation 5, a cytochrome b subunit (HydH) is present In organisation 6, the hydrogenase domain is fused to a nitrate reductase or sulfite reductase domain |
Catalytic site | [FeFe]-centre |
FeS clusters | Organisation 1: Absent Organisation 2: 2 [4Fe4S] clusters Organisation 3: 3 [4Fe4S] clusters, 1 [2Fe2S] cluster Organisation 4: 2 [4Fe4S] clusters Organisation 5: 2 [4Fe4S] clusters Organisation 6: 3 [4Fe4S] clusters, 1 [2Fe2S] cluster |
NCBI Accession | Organism | Hydrogenase Class | Phylum | Order | Activity (Predicted) | Oxygen Tolerance (Predicted) | Subunits (Predicted) | Metal Centres (Predicted) | Accessory Subunits (Predicted) |
---|---|---|---|---|---|---|---|---|---|
WP_010296878.1 | Clostridium senegalense | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_010680041.1 | Fusobacterium gonidiaformans | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_010963357.1 | Clostridium acetobutylicum | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_011591981.1 | Clostridium perfringens | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_011593109.1 | Clostridium perfringens | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_011641809.1 | Syntrophomonas wolfei | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_011722328.1 | Clostridium novyi | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_011943326.1 | Thermotoga petrophila | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_011993425.1 | Fervidobacterium nodosum | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012003383.1 | Thermotoga lettingae | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012057804.1 | Thermosipho melanesiensis | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012310723.1 | Thermotoga sp. RQ2 | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012545114.1 | Thermodesulfovibrio yellowstonii | [FeFe] Group A1 | Nitrospirae | Nitrospirales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_012580432.1 | Thermosipho africanus | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012744686.1 | Kosmotoga olearia | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_012896175.1 | Thermotoga naphthophila | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_013174329.1 | Syntrophothermus lipocalidus | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_013387092.1 | Ilyobacter polytrophus | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_013388849.1 | Ilyobacter polytrophus | [FeFe] Group A1 | Fusobacteria | Fusobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_013771726.1 | Cellulomonas fimi | [FeFe] Group A1 | Actinobacteria | Actinomycetales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_013822105.1 | Desulfotomaculum kuznetsovii | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_013907974.1 | Thermodesulfatator indicus | [FeFe] Group A1 | Thermodesulfobacteria | Thermodesulfobacteriales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_013931422.1 | Thermotoga thermarum | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_014015846.1 | Megasphaera elsdenii | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_014016432.1 | Megasphaera elsdenii | [FeFe] Group A1 | Firmicutes | Selenomonadales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_014256388.1 | Ruminiclostridium clariflavum | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_014450900.1 | Fervidobacterium pennivorans | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_014450901.1 | Fervidobacterium pennivorans | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_014730285.1 | Mesotoga prima | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_015392538.1 | Clostridium saccharoperbutylacetonicum | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_015393615.1 | Clostridium saccharoperbutylacetonicum | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_015739747.1 | Ammonifex degensii | [FeFe] Group A1 | Firmicutes | Thermoanaerobacterales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_015918980.1 | Thermotoga neapolitana | [FeFe] Group A1 | Thermotogae | Thermotogales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_015943803.1 | Desulfitobacterium hafniense | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_016148395.1 | Butyricicoccus pullicaecorum | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_016206989.1 | Clostridium sartagoforme | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_016475267.1 | Sutterella wadsworthensis | [FeFe] Group A1 | Betaproteobacteria | Burkholderiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_017752954.1 | Clostridium tyrobutyricum | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_017890120.1 | Caldatribacterium californiense | [FeFe] Group A1 | Atribacteria | Unclassified | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 2 x [2Fe2S] cluster | None |
WP_018592904.1 | Terrisporobacter glycolicus | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_018712282.1 | Campylobacter ureolyticus | [FeFe] Group A1 | Epsilonproteobacteria | Campylobacterales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_020488527.1 | Dehalobacter sp. FTH1 | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_021432477.1 | Peptoclostridium bifermentans | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_021433568.1 | Peptoclostridium bifermentans | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_021800870.1 | Clostridium intestinale | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_021801498.1 | Clostridium intestinale | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_021876669.1 | Clostridium chauvoei | [FeFe] Group A1 | Firmicutes | Clostridiales | Evolving | Labile | 1 | [FeFe]-centre, 3 x [4Fe4S] clusters, 1 x [2Fe2S] cluster | None |
WP_022372326.1 | Sutterella sp. CAG:397 | [FeFe] Group A1 | Betaproteobacteria | Burkholderiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_022473470.1 | Sutterella sp. CAG:521 | [FeFe] Group A1 | Betaproteobacteria | Burkholderiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
WP_022473608.1 | Sutterella sp. CAG:521 | [FeFe] Group A1 | Betaproteobacteria | Burkholderiales | Evolving | Labile | 1 | [FeFe]-centre, 2 x [4Fe4S] clusters | None |
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