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P-Type_ATPase.fasta

The curated dataset is a FASTA file consisting of 524 P-Type ATPase sequences and their associated subtype. The sequences have been collected and manually curated using UniProtKB, PROSITE, TCDB, and the scientific literature [1, 2].

P-Type_ATPase_BLAST.zip

This BLAST+ database is built from the curated dataset. This is the database used in the k-NN classification method.

P-Type_ATPase_SeqL.zip

This package contains the SeqL models built from the curated dataset using the one-vs-all method. Predictor files for each model are also included.

  1. Axelsen, K.B., Palmgren, M.G. Evolution of substrate specificities in the P-type ATPase superfamily. 1998.
  2. Møller, A.B., Asp, T., Holm, P.B., Palmgren, M.G. Phylogenetic analysis of P5 P-type ATPases, a eukaryotic lineage of secretory pathway pumps. 2008.